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Viral infection diagnostics using next-generation sequencing

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Virtool

Development

Virtool uses a repository-scoped development service to run isolated Docker Compose environments for Git worktrees. Install Docker Engine, Node 24, pnpm, and Worktrunk, then run:

vtd up
vtd ui
vtd list
vtd stop
vtd remove

Lifecycle commands return immediately. Follow progress in the management UI at https://dev.localhost:9443. See the development guide for data safety, workflow scheduling, and troubleshooting.

Images

Every image ships from its app's Dockerfile. A release publishes only the images whose app version changed; see Continuous integration.

Target Published image
web ghcr.io/virtool/web
internal ghcr.io/virtool/internal
create-sample ghcr.io/virtool/create-sample
create-subtraction ghcr.io/virtool/create-subtraction
pathoscope ghcr.io/virtool/pathoscope
nuvs ghcr.io/virtool/nuvs

Build one image locally by naming its Bake target:

docker buildx bake -f packages/image-build/docker-bake.hcl pathoscope

The web build uploads its source maps to Sentry only when SENTRY_AUTH_TOKEN is set. SENTRY_RELEASE names the Sentry release, because the build context has no Git history. The release job sets both.

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Viral infection diagnostics using next-generation sequencing

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